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Agent Skills Guide

nextflow-development

published 2026/01/13

Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

📦 Install Skill

Command line install

Install directly with the `skills` CLI.

npx skills add anthropics/life-sciences/nextflow-development

Local download

Download only this skill directory.

Download nextflow-development only
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