bio-workflows-fastq-to-variants
•published 2026/01/25
End-to-end DNA sequencing workflow from FASTQ files to variant calls. Covers QC, alignment with BWA, BAM processing, and variant calling with bcftools or GATK HaplotypeCaller. Use when calling variants from raw sequencing reads.
📦 Install Skill
Command line install
Install directly with the `skills` CLI.
npx skills add GPTomics/bioSkills/workflows/fastq-to-variantsFile Explorer
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