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Agent Skills Guide

scfgsea

published 2026/01/26

Performs fast Gene Set Enrichment Analysis (GSEA) on single-cell data using fgsea R package. Identifies enriched biological pathways by ranking genes based on differential expression between cell groups. Generates enrichment scores, significance metrics, and publication-ready visualizations.

📦 Install Skill

Command line install

Install directly with the `skills` CLI.

npx skills add pwwang/immunopipe/skills/scfgsea

Local download

Download only this skill directory.

Download scfgsea only
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